شناسایی باکتری‌های تجزیه‌کننده نفت از مناطق آلوده پلدختر و بررسی فاکتورهای مؤثر بر کارآیی تجزیه در آنها

نوع مقاله : علمی - پژوهشی

نویسندگان

1 دانشجوی کارشناسی‌ارشد بیماری‌شناسی گیاهی، دانشکده کشاورزی دانشگاه لرستان، لرستان

2 استادیار گروه گیاهپزشکی، دانشکده کشاورزی دانشگاه لرستان، لرستان

3 مربی گروه گیاهپزشکی، دانشکده کشاورزی دانشگاه لرستان، لرستان

چکیده

    آلودگی اکوسیستم‌های طبیعی توسط آلاینده‌های نفتی به‌دلیل پایداری بالا و اثرات زیان‌بار بر محیط‌زیست و سلامت انسان­ها بیشتر مورد توجه قرار گرفته است. امروزه از روش­های متعدد فیزیکی، شیمیایی، حرارتی و زیست پالایی به‌منظور اصلاح محیط­های آلوده استفاده می­شود. فناوری‌ زیست پالایی بر پایه‌ی استفاده از ریزجانداران طبیعی و یا تراریخت به‌‌منظور احیای مجدد مکان‌های آلوده و حفاظت از محیط‌‌زیست استوار است. در این پژوهش نمونه­برداری از خاک و آب آلوده منطقه تنگ­فنی پلدختر به‌منظور جداسازی و شناسایی باکتری‌های بومی تجزیه‌کننده ترکیبات نفتی صورت گرفت. نمونه­ها پس از انتقال به آزمایشگاه روی محیط­کشت­های نوترینت آگار، نوترینت براث و 2xYT کشت گردیدند. بعد از خالص‌سازی، جدایه­های باکتریایی براساس خصوصیات فنوتیپی - بیوشیمیایی و توالی­یابی بخشی از ناحیه ژن 16SrDNA به‌عنوان گونه­های Pseudomonas aeruginosa، Acinetobacter junii، Acinetobacter baumannii،Delftia tsuruhatensis،Sphingobacterium multivorum، Stenotrophomonas acidaminiphila، Comamonas koreensis شناسایی شدند. همچنین جدایه­های باکتریایی از نظر فاکتورهای تشکیل بیوفیلم، تولید سیدروفور و حرکت اسوارمینگ مورد بررسی قرار گرفتند، که بیشترین میزان تشکیل بیوفیلم و حرکت اسوارمینگ مربوط به گونه Pseudomonas aeruginosaبود. در این تحقیق برای نخستین بار باکتریComamonas koreensis به‌عنوان تجزیه‌کننده نفت معرفی گردید.
 

کلیدواژه‌ها


عنوان مقاله [English]

Identification of Oil Degrading Bacteria from Poldokhtar Polluted Areas and Investigation of Factors Affecting Their Degradation Performance

نویسندگان [English]

  • soma Narimany 1
  • Eidi Bazgir 2
  • Hosein Mirzaee Najafgholi 3
1 Plant Pathologists Graduate Student, Department of Plant Protection,Faculty of Agriculture, University of Lorestan, Khoramabad
2 Assistant Professor, Department of Plant Protection, Faculty of Agriculture, University of Lorestan, Khoramabad
3 Coach, Department of Plant Protection, Faculty of Agriculture, University of Lorestan, Khoramabad
چکیده [English]

Pollution of natural ecosystems by petroleum compounds have been more considered because of their high persistence in environment and adverse impacts on human health. Nowadays, a wide range of physical, chemical, thermal and bioremediation methods are employed in order to remediate contaminated sites. Bioremediation technology is based on use the natural or engineered microorganisms for reclamation of contaminated sites and environmental conservation. The current study was carried out in order to isolate and characterize the oil degrading native bacteria from Tange Fani Poldokhtar region, Lorestan province, Iran. Soil and water of contaminated sites were sampled and after transfer to the laboratory, samples were cultivated on the nutrient agar, nutrient broth and 2xYP media. After purification, bacterial strains were identified on the basis of phenotypic-biochemical traits and sequence of 16S rDNA gene as Pseudomonas aeruginosa, Acinetobacter junii, Acinetobacter baumannii, Delftia tsuruhatensis, Sphingobacterium multivorum, Stenotrophomonas acidaminiphila and Comamonas koreensis. Furthermore, the bacterial strains were evaluated regarding biofilm formation, siderophore production and swarming motion, which the highest amount of biofilm formation and swarming motion was belonged to P. aeruginosa. In this study, bacterium Comamonas koreensis for the first time as oil degrading introduced.

کلیدواژه‌ها [English]

  • Petroleum compounds
  • Bioremediation
  • Bacteria
  • Pseudomonas aeruginosa
  • Biofilm
Alisi, C., Musella, R., Tasso, F., Ubaldi, C., Manzo, S., Cremisini, C. and Sprocati, A. R. 2009. Bioremediation of diesel oil in a co-contaminated soil by bioaugmentation with a microbial formula tailored with native strains selected for heavy metals resistance. Science of the Total Environment, 407 (8): 3024-3032.
Banin, E., Vasil, M. L. and Greenberg, E. P. 2005. Iron and Pseudomonas aeruginosa biofilm formation. Proceedings of the National Academy of Sciences of the United States of America, 102 (31): 11076-11081.
Basuki, W., Syahputra, K., Suryani, A. T. and Pradipta, I. 2012. Biodegradation of used engine Oil by Acinetobacter junii TBC 1.2. Indonesian Journal of Biotechnology, 16 (2): 132-138.
Bhuvaneswari, G. 2013. Molecular characterization of camphor utilizing bacterial isolates from refinery sludge and detection of target loci-Cytochrome P-450 cam mono oxygenase (cam C gene) by PCR and gene probe. Springer Plus, 2 (1): 1-9.
Cerqueira, V. S., Hollenbach, E. B., Maboni, F., Vainstein, M. H., Camargo, F. A., Peralba, M. D. C. R. and Bento, F. M. 2011. Biodegradation potential of oily sludge by pure and mixed bacterial cultures. Bioresource Technology, 102 (23): 11003-11010.
Das, N., Basak, G., Lakshmi, V., Salam, J. A. and Evy Alice Abigail, M. 2012. Application of biofilms on remediation of pollutants-An Overview. Journal of Microbiology and Biotechnology Research, 2 (5): 783-790.
Dellanno, A., Beolchini, B., Rocchetti, L., Luna, G. M. and Danovaro, R. 2012. High bacterial biodiversity increasea degradation performance of hyd-rocarbons during bioremediation of contaminated harbor marine sed-Iments. Environmental Pollution, 167: 85-92.
Ebrahimi, M., Fallah, A. R. and Sarikhani, M. R. 2013. Isolation and identification of oil-degrading bacteria from oil-polluted soils and assessment of their growth in the presence of gas oil. Journal of Water and soil science, 23 (1): 109-121.
Erdogan, E., Sahin, F. and Karaca, A. 2014. Determination of petroleum-degrading bacteria isolated from crude oil-contaminated soil in Turkey. African Journal of Biotechnology, 11 (21): 4853-4859.
Eskandary, S., Hoodaji, M. and Tahmourespour, A. 2010. Study of growth process and phenol biodegradation by a bacterium isolated from wastewater (in vitro). Journal of Water and Wastewater, 22 (2): 78-84.
Fahy, P. C. and Persley, G. J. 1983. Plant bacterial disease: A diagnostic guide. Academic Press. Sydney, Australia, 393 pp.
Farzadkia, M., Rezaei Kalantary, R., Mousavi, G., Jorfi, S. and Gholami, M. 2010. The effect of organic loading on propylene glycol removal using fixed bed activated sludge hybrid reactor. Chemical and Biochemical Engineering Quarterly, 24 (2): 227-234.
García-Díaz, C., Ponce-Noyola, M. T., Esparza-García, F., Rivera-Orduña, F. and Barrera-Cortés, J. 2013. PAH removal of high molecular weight by characterized bacterial strains from different organic sources. International Biodeterioration and Biodegradation, 85: 311-322.
George, A. 2011. Microtiter dish biofilm formation assay. Journal of Visualized Experiments, 47.
Goller, C. and Romeo, T. 2008. Environmental influences on biofilm development. Bacterial Biofilms Springer, 322: 37-66 .
Hamzah, A., Phan, C. W., Abu Bakar, N. F. and Wong, K. K. 2013. Biodegradation of crude oil by constructed bacterial consortia and the constituent single bacteria isolated from Malaysia. Bioremediation Journal, 17 (1): 1-10.
Head, I. M., Jones, D. M. and Roling, W. F. 2006. Marine microorganism makeameal of oil. Nature Publishing Group. 4: 173-182.
Javaheri, M., Mirzaei najafgholi, H., Jalali, S. and Aeini, M. 2013. Phytobacteriology and laboratory methods. Moghim Press, 35 pp.
Jiang, X. and Pace, J. 2006. Microbial biofilms in: Pace, J., Rupp, M., Finch, R. eds., Biofilms, Infection and Antimicrobial Therapy. CRC Press, Boca Raton, Florida, USA, 3-19.
Jørgensen, K., Puustinen, J. and Suortti, A. M. 2000. Bioremediation of petroleum hydrocarbon-contaminated soil by composting in biopiles. Environmental Pollution, 107 (2): 245-254.
Kafilzadeh, F., Hoseyni, S. Z. and Jamali, H. 2012. Isolation and identification of phenanthrene-degrading endemic bacteria from crud oil contaminated soils around Abadan refinery and evaluation of their growth. Jundishapur Journal of Health Sciences, 4 (1): 29-39.
Kamali, A. Ahmadzade, M. and Behbodi, K. 2011. Investigation on biofilm formation stage in strains of Pseudomonas fluorescens and the influence of some nutritional factor on biofilm formation of selected strain. Iranian Journal of Plant Pathology, 47 (4): 463-470.
Komukai-Nakamura, S., Sugiura, K., Yamauchi-Inomata, Y., Toki, H., Venkateswaran, K., Yamamoto, S., Tanaka, H. and Harayama, S. 1996. Construction of bacterial consortia that degrade Arabian light crude oil. Journal of Fermentation and Bioengineering, 82 (6): 570-574.
Kovacs, N. 1956. Identification of Pseudomonas pyocyanea by the oxidase reaction. Nature, 178:703 pp.
Kumar, A., Bisht, B. S., Joshi, V. O.  and Dhewa, T. 2011. Review on bioremediation of polluted environment: A management tool. International Journal of Environmental Sciences, 1: 1079-1093.
Lin, T. C., Pan, P. T. and Cheng, S. S. 2010. Ex situ bioremediation of oil-contaminated soil. Journal of Hazardous Materials, 176 (1):27-34.
Ma, Y., Wang, L. and Shao, Z. 2006. Pseudomonas, the dominant polycyclic aromatic hydrocarbon‐degrading bacteria isolated from Antarctic soils and the role of large plasmids in horizontal gene transfer. Environmental Microbiology, 8 (3):455-465.
Madueno, L., Coppotelli, B., Alvarez, H. and Morelli, I. 2011. Isolation and characterization of indigenous soil bacteria for bioaugmentation of PAH contaminated soil of semiarid Patagonia, Argentina International Biodeterioration and Biodegradation, 65: 345-351.
Mandri, T. and Lin, J. 2007. Isolation and characterization of engine oil degrading indigenous microrganisms in Kwazulu-Natal, South Africa. African Journal of Biotechnology, 6 (1): 23-27.
Mangwani, N., Shukla, S. K., Kumari, S., Rao, T. and Das, S. 2014. Characterization of Stenotrophomonas acidaminiphila NCW 702 biofilm for implication in the degradation of polycyclic aromatic hydrocarbons. Journal of Applied Microbiology, 117 (4): 1012-1024.
Meyer, J. A. and Abdallah, M. 1978. The fluorescent pigment of Pseudomonas fluorescens: biosynthesis, purification and physicochemical properties. Journal of General Microbiology, 107 (2): 319-328.
Mohite, B. V.,  Jalgaonwala, R. E., Pawar, S. and Morankar, A. 2010. Isolation and characterization of phenol degrading bacteria from oil   contaminated soil. Innovative Romanion Food Biotechnology, 7: 61-65.
Nakamura, F. M., Germano, M. G. and Tsai, S. M. 2014. Capacity of aromatic compound degradation by bacteria from Amazon dark earth. Diversity, 6 (2): 339-353.
Neilands, J. and Nakamura, K. 1991. Detection, determination, isolation, characterization and regulation of microbial iron chelates. Handbook of microbial iron chelates. CRC Press, Inc., Boca Raton, Fla: 1-14 pp.
Nourieh, N., Nasseri, S., Rezaei-Kalantar, R., Nadafi, K., Mahvi, A. H. and Khazaee, M. 2009. Isolation and study of biodegradiation potential of phenanthrene degrading bacteria. Quarterly Research Journal of Lorestan University of Medical Sciences, 11 (3): 53-62.
Saeidi, S., Fotovat, A. and Lakzian, A. 2013. Biodegradation of normal-hexadecane in soil by pseudomonas and selected native bacteria from crud oil contaminated regions. Journal of Water and Soil, 27 (2): 257-265.
Salanitro, J. P., Dorn, P. B.,  Huesemann, M. H., Moore, K. O.,  Rhodes, I. A., Rice Jackson, L. M.,  Vipond, T. E., Westem, M. M. and  Wisniewski, H. L. 2009. Crude oil hydrocarbon bioremediation and soil ecotoxicity assessment. Environmental Science and Technology, 31(6): 1769-1776.              
Sambrook, J. and Russell, D. W. 2001. Molecular cloning: a laboratory manual (3-volume set). Cold spring harbor laboratory press Cold Spring Harbor, New York.
Sarvi Moghanlo, V., Ghorom, M., Motamedy, H., Pourzamani, H. R. and falah, M. 2012. Identification of hydrocarbon degrading bacteria genus from oil- crude contaminated soils. Journal of Health Research, 8 (6): 1098-1106.
Schaad, N. W., Jones, J. B. and Chun, W. 2001. Laboratory guide for identification of plant pathogenic Bacteria. American Phtopathology Society Minnesota. 373 pp.
Silva-stenico, M. E., Pacheco, F. T. H., Rodrigues, J. L. M., Carrilho, E. and Tsai, S. M. 2005. Growth and siderophore production of Xylella fastidiosa under iron-limited conditions. Microbiological Research, 160: 429-436.
Talaie, A. R., Jafaarzahe, N. A., Talaie, M. R. and Beheshti, M. 2009. Optimization of floating crude oil biodegradation by isolated microorganisms via experimental design method. Koomesh Journal, 11 (1): 41-53.
Thangaraj, K., Kapley, A. and Purohit, H. J. 2008. Characterization of diverse Acinetobacter isolates for utilization of multiple aromatic compounds. Bioresource Technology, 99 (7): 2488-2494.
Thapa, B., Kumar, A. and Ghimire, A. 2012. A review on bioremediation of petroleum hydrocarbon contaminants in soil. Kathmandu University Journal of Science, Engineering and Technology, 8: 164-170.
Tyagi, M., da Fonseca, M. M. R. and de Carvalho, C. C. 2011. Bioaugmentation and biostimulation strategies to improve the effectiveness of bioremediation processes. Biodegradation, 22: 231-241.
Van Hamme, J. D., Singh, A. and Ward, O. P. 2003. Recent advances in petroleum microbiology. Microbiology and Molecular Biology Reviews, 67 (4): 503-549.
Wang, Y., Wu, C., Wang, X. and Zhou, S. 2009. The role of humic substances in the anaerobic reductive dechlorination of 2,4-dichlorophenoxyacetic acid by Comamonas koreensis strain CY01. Journal of Hazardous Materials, 164 (2): 941-947.
Weisburg, W. G., Barns, S. M., Pelletier, D. A. and Lane, D. J. 1991. 16S ribosomal DNA amplification for phylogenetic study. Journal of Bacteriology, 173 (2): 697-703.
Yarahamadi, Z., Besharati, H., Fallah Nosratabad, A. R. and Sarikhani, M. R. 2012. Effect of phosphorous concentration on isolated petrolum-degrading bacteria from Boushehr Province soil in presence of phenanthrene. Electronic Journal of Soil Management and Sustainable Production, 2 (4): 165-172.
Zhang, J. L. and Qiao, C. L. 2002. Novel approaches for remediation of pesticide pollutants. International Journal of Environment Pollution,18 (5): 423-433.
Zhang, Q., Wang, D., Li, M., Xiang, W. N. and Achal, V. 2014. Isolation and characterization of diesel degrading bacteria, Sphingomonas sp. and Acinetobacter junii from petroleum contaminated soil. Frontiers of Earth Science, 8 (1): 58-63.